MIPAR User Manual
v5.0
v5.0
v4.5
v4.4
v4.3
v4.2
v4.1
v4.0
Table of Contents
MIPAR User Manual
v5.0
MIPAR User Manual — v5.0
MIPAR User Manual — v4.5
MIPAR User Manual — v4.4
MIPAR User Manual — v4.3
MIPAR User Manual — v4.2
MIPAR User Manual — v4.1
MIPAR User Manual — v4.0
Getting Started
Install and Activate
Installation Troubleshooting
Activation Troubleshooting
License Key Transfer
Introduction
Supported Formats
System Requirements
GPU Computation
Preferences
Keyboard Shortcuts
Tutorials
Overview
Image Processor
Batch Processor
Session Processor (formerly Post Processor)
AI Session Processor (formerly Deep Learning Trainer)
3D Toolbox
Recipe Store
Image Processor
Layout
The Recipe
Recipe Templates
Chapters
Layers
Notes, Flags, Interruptible, Custom Recipe Names
Simple Recipe Mode
Calibrating The Scale
Scale Bar
Optimization
Measurements
Functions
File
Open Image
Open Recent Image
Open Images as Channels
Load Reference Image
Load Recipe
Load Recent Recipe
Save Current Image
Save Reference Image
Save All Images
Save All Layers
Save Recipe
Save Recipe As
Print Current Image
Preferences
Quit
Edit
Undo
Burn Scale Bar
Set as Reference Image
Crop Image
Resize Image
Rotate Image
Flip Image
Translate Image
*Register Image
Sparsely Sample Image
Draw Random Lines
Color
Color Select
Color Cluster
Color Deconvolution
Channel Operation
Pre-Processing
Adjust Contrast
Histogram Equalization
*Histogram Match
Flatten Background
Smart Cluster
Superpixels
Median Filter
Wiener Filter
Non-Local Means
Gaussian Blur
Average Blur
Sum Filter
Grayscale Dilate
Grayscale Erode
StdDev Filter
Entropy Filter
Gradient Filter
Highlight Lines
Bright Texture
Dark Texture
Advanced Texture
Similarity
Pattern Mapping
Orthogonal Correlate
Symmetry Mapping
*Cross-Correlate
Sharpen
Frequency
FFT Filter
Make FFT
Apply Stored FFT Filter
*Grayscale Interpolation
*Grayscale Reconstruction
Deep Learning
Apply Model
Call Output
Segmentation
Invert
Blank
Manual Edit
Basic Threshold
Range Threshold
Adaptive Threshold
E-M Threshold
*Local Threshold
Watershed
Find Edges
Find Circles
Find Lines
Advanced
Find Text
Find Facial Features
Auto Segmentation
*Region Grow
*Fast Marching Method
*Active Contour
Find Global Maximum
Find Global Minimum
Find Local Maxima
Find Local Minima
Morphology
Dilate
Dilate Uniform
Dilate Smart
Dilate Retain
Erode
Erode Uniform
Erode Smart
Erode Retain
Separate Features
Clean Boundaries
Smooth Features
Extend Features
Perimeter Pixels
Skeletonization
Thin
Pixel Lines
Distance Map
Clean-Up
Reject Features
Fill All Holes
Relative Size Filter
Remove Edge Features
Replace With
Mark Center
Memory
Set Companion Image
Call Companion Image
Load Companion Image
Set Memory Image #1-6
Call Memory Image #1-6
Call Original Image
Math
*Union
*Minus
*Intersection
*Keep Mutual
*Keep Exclusive
Make Grayscale
*Add
*Average
*Divide
*Multiply
*Subtract
Add Value
*Merge Darker Pixels
*Merge Lighter Pixels
View
Image Histogram
Specific Feature
Manage Layers
Measurements
Area
Area Fraction
Count
Count Fraction
Estimate Count
Intercepts
Image Dimensions
Number Density
Perimeter
Perimeter Fraction
Path Length
*Intensity Mean
*Intensity StdDev
*Intensity Sum
*Correlation Coefficient
*Mutual Information
Feature Measurements
Color by Measurements
Local Measurements
Custom Measurements
Create Custom Measurement
Variables and Operators
Tools
Histogram of Measurements
Construct Polar Plot
Batch Processor
Layout
The Session
Running a Batch
Combine Channels
Batch Pause and Resume
Real-Time Processor
Layout
Session Processor / AI Session Processor
General Layout
Measurements (formerly Post Processor)
Measurement Layout
Reviewing a Batch
Bulk Measurements
AI (formerly Deep Learning Trainer)
AI Layout
AI Training System Requirements
Tracing
Tracing in AI Session Processor
Tracing in Image Processor
Tracing in External Application
Training
Advanced Settings
Updating
Applying
3D Toolbox
Layout
Reconstruction
Visualization
Measurements
Volume
Volume Fraction
Surface Area
Surface Area Fraction
Count
Number Density
Intensity Mean
Intensity StdDev
Intensity Sum
Intercepts
Feature Measurements
Slice-by-Slice Measurements
Surface Measurements
Report Generator
System Requirements
Layout
Templates
Spotlight ✧˙₊
System Requirements
Install and Activate
Spotlight Tool
Snap Tool
Quick Start Videos
Live
Supported Cameras
Starting MIPAR Live
Layout
Setting up a Camera
Connecting a Camera
Refreshing the Camera List
Controlling Camera Settings
Image Size and Calibration
Brightness, Contrast, and Color
Advanced Settings
Capturing Images
Previewing the Camera
Auto-save
Capturing an Image
Saving a Captured Image
Applying Recipes
Batch Analysis
Calibrating Captured Pixel Size
Calibrating and Certifying Objectives
Known Software Conflicts
Checkpoint: Compliance by TotalLab
System Requirements
Install and Activate
MIPAR Checkpoint Server
MIPAR Checkpoint Client and MIPAR Analysis Engine
Reference Documents
User Accounts
Developing an Analysis Workflow
Typical Workflow
Required Elements
Performing Analysis
Quality Control Approval
Requesting Signoff
Completing Signoff
Exporting Results
Python API
Introduction
Install and Activate
Troubleshooting
Update Instructions
System Requirements
GPU Support
Library
activate()
aboutAPI
activatePK()
exeRecipe()
getPref()
initialize()
recipeMeta()
setPref()
setPyEnv()
startLicenseMan()
terminate()
Release Notes
v3.3.1 API Release Notes
v3.3.4 API Release Notes
v3.4.0 API Release Notes
v3.4.1 API Release Notes
v3.4.2 API Release Notes
v3.4.4 API Release Notes
v4.0.0 API Release Notes
v4.0.1 API Release Notes
v4.1.0 API Release Notes
v4.1.1 API Release Notes
v4.1.2 API Release Notes
v4.2.0 API Release Notes
v4.2.1 API Release Notes
v4.2.2 API Release Notes
v4.3.0 API Release Notes
v4.3.1 API Release Notes
v4.4.0 API Release Notes
REST API
Introduction
System Requirements
Install and Activate
POST Method
JSON Output
Error Code Troubleshooting
Release Notes
v1.1.0 Release Notes
Release Notes
v1.x.x Release Notes
v2.x.x Release Notes
v3.0.0 Release Notes
v3.0.1 Release Notes
v3.0.2 Release Notes
v3.0.3 Release Notes
v3.0.4 Release Notes
v3.0.5 Release Notes
v3.1.0 Release Notes
v3.1.1 Release Notes
v3.1.2 Release Notes
v3.2.0 Release Notes
v3.2.1 Release Notes
v3.2.2 Release Notes
v3.2.3 Release Notes
v3.2.4 Release Notes
v3.3.0 Release Notes
v3.3.1 Release Notes
v3.3.2 Release Notes
v3.3.3 Release Notes
v3.3.4 Release Notes
v3.4.0 Release Notes
v3.4.1 Release Notes
v3.4.2 Release Notes
v3.4.3 Release Notes
v3.4.4 Release Notes
v4.0.0 Release Notes
v4.0.1 Release Notes
v4.1.0 Release Notes
v4.1.1 Release Notes
v4.1.2 Release Notes
v4.2.0 Release Notes
v4.2.1 Release Notes
v4.2.2 Release Notes
v4.3.0 Release Notes
v4.3.1 Release Notes
v4.4.0 Release Notes
v4.5.0 Release Notes
v5.0.0 Release Notes
Download as PDF
v3.4.4 API Release Notes
Functionality
setPref
: this method can now be used to update the
GPU
device selection by passing in the ‘gpuDeviceChoice’ key with an integer starting with 1 for the first
GPU
device on the system.
All engine changes have been brought over from:
v3.4.4
v3.4.2 API Release Notes
v4.0.0 API Release Notes
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