Visualization

MIPAR

MIPAR provides basic tools for visualizing your 3D Reconstruction with tools like volume slicing, surface rendering, and simple animation.

Avizo

Avizo is the leading high-performance 3D visualization and analysis software for scientific and industrial data. We recommend using Avizo for your final visualization tasks if you have access. MIPAR supports export of its surfaces, reference volumes, and segmented volumes to an Avizo file format.

More information about Avizo can be found at: https://www.fei.com/software/amira-avizo/

ParaView

ParaView is a powerful open-source visualization environment. MIPAR supports export of its surfaces, reference volumes, and segmented volumes to a VTK file format, which can be opened in ParaView.

Also, if ParaView is installed in C:\Program Files\Paraview (not C:\Program Files\Paraview-x.x.x) on a PC, or in “/Applications/paraview” on a Mac, the “Power Render” button in the Shortcut Bar will become active, and clicking it will export the current view of the reconstructed volume (i.e, Reference, B/W, Outline, Overlay, Labels, Layers) in a VTK file and automatically open it in ParaView.

ParaView can be downloaded at: http://www.paraview.org/download/