Use the PowerShell Step to embed your own scripts.

CMDLET Migration Flow built-in PowerShell CMDLETs to interface your scripts
Get-FlowVariable Assign the value from a Migration Flow Variable to a PowerShell variable.
Set-FlowVariable Assign the value from a PowerShell variable to a Migration Flow Variable.
Add-FlowLogRow Add a row to the Migration Flow Session Log. You can optionally set the outcome of the PowerShell Step to Ok/Warning/Error
Connect-PnPOnline Connect to SharePoint from PowerShell using a Migration Flow connection

PowerShell samples

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