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Scale Bar
Image Processor » Scale Bar
Scale bar toggle allows users to overlay a scale bar based on parameters specified in the scale bar format settings. Scale Bar Formatting 1. Show/Hide Scale Bar 2. Scale Bar Settings 3. Location 4. Length Allows users to toggle between manually set scale bar…
Burn Scale Bar
Image Processor » Functions » Edit » Burn Scale Bar
Edit > Burn Scale Bar Burns a scale bar to the Current Image. When the step is added, the shown scale bar will be burned. Scale bar settings for this step can be edited at any time. This current Scale Factor will be used when burning the scale bar. More information…
POST Method
REST API » POST Method
There are two commands that can be sent to the REST API using a POST call: process and activate Start the MIPAR REST API Docker image With docker hub running, execute the command docker run -it -p The can be set by the user, for example 8000:8000 and the is…
v3.4.2 Release Notes
Release Notes » v3.4.2 Release Notes
Improvements BP and RTP will now save intermediate session files during batch, such that sessions can be reviewed and/or merged followed a batch cancellation In Simple Mode in the IP, “Measurements” is now written beside the Measurements Panel…
v4.4.0 Release Notes
Release Notes » v4.4.0 Release Notes
New Features Pause/Resume Batch Processing We are pleased to introduce a new Save/Resume feature to our Batch Processor and Real-Time Processor, which allows users to pause active batch or real-time processing, and resume at a later time. Previous sessions…
v4.5.0 Release Notes
Release Notes » v4.5.0 Release Notes
New Features Spotlight Extension We are excited to introduce MIPAR Spotlight. Integrated into the Image Processor, Spotlight enables the next generation of feature detection. Spotlight behaves like any other detection Recipe step, so MIPAR Clean-up,…
v3.1.0 Release Notes
Release Notes » v3.1.0 Release Notes
New Features Copy & Paste It’s finally here. Now you can copy and paste an unlimited number of Recipe steps. To copy: click and drag, Shift-click, or Ctrl-click to select multiple steps and right-click > “Copy”, or “Ctrl+C”…
Tracing in Image Processor
Session Processor / AI Session Processor » AI (formerly Deep Learning Trainer) » Tracing » Tracing in Image Processor
This example shows a Recipe-assisted approach to tracing features in the Image Processor. This approach is most useful for tracing grain boundaries, or other similar features. Load Image and Recipe ⇩ Download “trace-grains” recipe. This can be used as a…
Starting MIPAR Live
Live » Starting MIPAR Live
MIPAR Live resides inside the Image Processor and is started simply by starting the Image Processor from the Launch Bar (1). When you have an active MIPAR Live license, the Image Processor opens in Live mode. To switch between Live and Recipe modes, use the Live /…
v3.3.2 Release Notes
Release Notes » v3.3.2 Release Notes
New Features Slice-by-Slice Measurements in 3D Slice-by-Slice Measurements can now be made in the 3D Toolbox. This enables any of the Feature Measurements to be made from all X-Y slices, where each slice’s feature labeling is based on the full 3D labeling.…
Calibrating The Scale
Image Processor » Calibrating The Scale
Embedded Image Scale Factors MIPAR can read embedded scale factors from over 150 file formats once the Bio-Formats plugin is in place. See the Supported Formats page for more information on setting up this plugin. If an image is opened which contains an embedded…
v3.1.2 Release Notes
Release Notes » v3.1.2 Release Notes
Bug Fixes Fixed bug where training settings panel in DLT could not be visible Fixed bug where “Remove Chapter” option in IP could not enable Fixed bug with “Undo” in PP and DLT Improvements Progress indicator now appears in 3DTB…
Edit
Image Processor » Functions » Edit
Contains functions for editing image dimensions and manipulating image position and rotation. Functions Undo Burn Scale Bar Set as Reference Image Size Crop Image Resize Image Position Rotate Image Flip Image Translate Image *Register…
aboutAPI
Python API » Library » aboutAPI
The aboutAPI function is used get information about the API version and license status Arguments Args: no inputs Returns: aboutDictionary with the following keys: version: API version as a string active: returns 1 if the machine has an active license res: returns…
Error Code Troubleshooting
REST API » Error Code Troubleshooting
Error Cause Possible Solution STATUS 500 Docker container is not running Docker container is not reachable Check if the Docker container is running Check if the Docker is reachable by making a call on the host machine using a…
Image Processor
Image Processor
The Image Processor is the most commonly used app. It is used for building and editing Recipes, as well as applying Recipes to single images. Recipes are sequences of image processing steps, in the right order and with the right settings, which work to identify…
v3.4.4 Release Notes
Release Notes » v3.4.4 Release Notes
Improvements Added preference to normalize images before scaling to 8-bit. Preference is on by default and will continue normalizing 16-bit and 32-bit images based on their min and max when scaling to 8-bit. With preference off, 16-bit and 32-bit images will not…
Visualization
3D Toolbox » Visualization
MIPAR MIPAR provides basic tools for visualizing your 3D Reconstruction with tools like volume slicing, surface rendering, and simple animation. Avizo Avizo is the leading high-performance 3D visualization and analysis software for scientific and industrial data. We…
v3.4.1 Release Notes
Release Notes » v3.4.1 Release Notes
Improvements Added a preference to increase the amount of memory available for opening specialty file formats with Bio-Formats Removed “Enter Dimensions” entry from Crop menu in 3D Toolbox since functionality is present in Crop > Draw Bug…
Create Custom Measurement
Image Processor » Functions » Measurements » Custom Measurements » Create Custom Measurement
Create Custom Measurement An interface to create a new custom measurement or edit an existing custom measurement. 1. Measurement Setup Name: (required) measurement name as it should appear in MIPAR reports and tables. Must not have special characters. Variable…
Activation Troubleshooting
Getting Started » Install and Activate » Activation Troubleshooting
Error During Cause Possible Solution MIPAR crashes on starup or during launching of an app OR HASP API DLL dynamically unloaded with active logins Startup MIPAR crashed on startup and thus did not properly log out of the license.…
Variables and Operators
Image Processor » Functions » Measurements » Custom Measurements » Variables and Operators
Variables and Operators Helpful list of all valid formula operators and their syntax as well as built in and custom measurement variables. Variables and Operators windows is accessed through Custom Measurement Manager>Create New/Edit>Variables/Operators 1.…
v3.4.0 API Release Notes
Python API » Release Notes » v3.4.0 API Release Notes
Functionality All engine changes have been brought over from: v3.4.0 exeRecipe now accepts a python numpy array as an input: exeRecipe added aboutAPI method which returns the API version, and license status: aboutAPI Hotfixes 3.4.0.2 Summary stats of some…
v3.0.0 Release Notes
Release Notes » v3.0.0 Release Notes
Major New Features Deep Learning The most significant new technology to come to MIPAR yet. Teach MIPAR to detect even the most complex features simply by tracing. Models are trained in the new Deep Learning Trainer. Trained models can be applied to images as…
v4.0.0 Release Notes
Release Notes » v4.0.0 Release Notes
New Features Curve Fitting Added curve fitting to the Color by Measure, Local Measurements and Histogram of Measurements windows. Users are now able to add normal, log normal and bimodal fits to their data, as well as display fit parameters. These are…
v4.2.2 Release Notes
Release Notes » v4.2.2 Release Notes
Improvements Added dedicated Path Length image and feature measurements Added ability to measure the exact floating-point Euclidean distance map as a Feature Image Intensity measurement Feature Measurements > Intercepts options have been changed from…
Preferences
Getting Started » Preferences
Layout 1. MIPAR Open Directory Default folder for opening and image or recipe on MIPAR launch. 2. Calibration and Measurements Units Calibration units are used to display the scale bar and are used as default during recipe calibration. Measurement units are used…
Tracing in AI Session Processor
Session Processor / AI Session Processor » AI (formerly Deep Learning Trainer) » Tracing » Tracing in AI Session Processor
Fully Manual This example shows a fully manual approach to tracing features directly in the AI Session Processor. Downloads You may download the sample reference images to use as learning tools and follow this example. ⇩ Reference Images Load References Begin…
v4.3.1 Release Notes
Release Notes » v4.3.1 Release Notes
Improvements Added the ability to save the current view from the Image Processor into a recipe, so that the view is restored when the recipe is restored. Remembered settings include Simple Mode, showing or hiding measurements, overlay vs. outline and their…
v4.3.0 Release Notes
Release Notes » v4.3.0 Release Notes
New Features Custom Measurements MIPAR now supports user defined measurements using formulas and mapping. Define new measurements using algebraic expressions, using existing measurements and other custom measurements as arguments. Map any measurement output to…
Applying
Session Processor / AI Session Processor » AI (formerly Deep Learning Trainer) » Applying
Once a deep learning model is trained, it can be applied to a new image to automate feature detection. Effectively, application of a deep learning model results in a pre-processed version of the original image, where features of interest are “lit-up”…
AI Training System Requirements
Session Processor / AI Session Processor » AI (formerly Deep Learning Trainer) » AI Training System Requirements
Training GPU A GPU is strongly recommended for training deep learning models. Training performance on a GPU can be up to 20x faster than on a CPU, and can shorten training time from weeks to hours. *GPU training requires an NVIDIA GPU with compute capability 3.5 to…
Tracing in External Application
Session Processor / AI Session Processor » AI (formerly Deep Learning Trainer) » Tracing » Tracing in External Application
There are several applications available for manual image tracing on desktop and mobile operating systems. Below are just a few of the options for Windows and Mac platforms: Windows Mac Adobe Photoshop x x Gimp x …
v3.4.0 Release Notes
Release Notes » v3.4.0 Release Notes
New Features Local Measurements in Recipe Add local measurements as a step in the recipe! They can be displayed with a simple click after recipe loading and summary stats (e.g., mean, min, max, etc.) of the local measurement will appear in the global…
Feature Measurements
Image Processor » Functions » Measurements » Feature Measurements
Measurements > Feature Measurements Feature Measurements allows a variety of measurements to be made from each feature in the image or Layer. 1. Size Area: Area of each feature. Area Fraction: Area fraction occupied by each feature relative to entire…