IP2 updated info:

  • 5/7/20 Targeted Quant Analysis manual was updated. Users can quantify peptides without running a search engine. Click here for more info http://manual.integratedproteomics.com/1/en/topic/ta
  • 4/15/20 DTASelect option to correct delta mass for FDR calculation (DMS)
  • 4/1/20 peptide level n-term, c-term diff mod search option
  • 3/1/20 spectral library search tool
  • 2/20/20 batch DTASelect option was added
  • 12/13/19 IP2 batch spectra upload manual page was updated. Click here for more info https://www.manula.com/manuals/ip2/ip2/1/en/topic/5-3-batch-spectra-upload
  • 12/11/19 IP2 API development kit version 2 was released
  • 12/9/19 ‘Use low fragment ions’ option in the search page was moved to advanced parameters box
  • 11/13/19 New Census quant tool analyzes TMT data >10 times faster
  • 11/04/19 Fast version of DTASelect was deployed
  • 11/13/19 New Census quant tool analyzes TMT data >10 times faster
  • 11/04/19 Fast version of DTASelect was deployed
  • 10/28/19 split scan number param in batch search is added
  • 9/3/19 TMT 16-plex support has been added
  • 8/20/19 Thermal Proteome Profile (TPP) Temperature Range (TR) tool was added.
  • 8/20/19 TMT re-filtering performance issue was fixed.
  • 8/19/19 Spectrum level FDR was added to the search result page
  • 8/11/19 Users can save parameters in a quantitative analysis.
  • 8/11/19 Prolucid applies new high-resolution algorithm when users specify fragment mass tolerance equal to or less than 100 ppm.
  • 8/11/19 Clustering Analysis Tool was added. Click here for more info
  • 8/10/19 Peptide group option (-ug) in DTASelect filter.
  • 5/17/19 Reactome pathway analysis tool was added.
  • 4/2/19 Fractional analysis tool and its manual was updated.
  • 3/21/19 Fractional data analysis tool was added.
  • 2/26/19 isobaric quant analysis (e.g. TMT) updates progress bar in the job status page
  • 2/22/19 Molecular weight and protein length are added to the protein-level identification page
  • 2/20/19 Batch uploading page was changed from flash to javascript with upload validation check. The batch uploading tool is designed to upload multiple spectral files and create multiple experiments automatically
  • 2/17/19 Kinase Enrichment Analysis with Phosphosites tool was added.
  • 2/10/19 Unique peptide filtering was added to isobaric(e.g. TMT) pages
  • 2/10/19 retention time was added to search result page
    click here for more


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